Finally forced to switch to manage Payments.
I noticed after I had a few sales in Managed Payments that my totals did not add up with my record keeping data pulled from GarageSale. After clicking around eBay Sellers Hub I found that eBay is Charging a .30¢ for processing payments. That 30¢ does not show up anywhere in GarageSale.
Paypal used to charge a Transaction Fee, but now eBay is under Managed Payments its eBay that get the Transaction Fee.
I understand why its not showing up in GarageSale Orders but is there a way to account for this in a future update?